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Monday 19 March 2007

Is Information Extraction from the scientific litterature ready for Life science ?

For the average biologist, hands-on literature mining currently means a keyword search in PubMed. However, methods for extracting biomedical facts from the scientific literature have improved considerably, and the associated tools will probably soon be used in many laboratories to automatically annotate and analyse the growing number of system-wide experimental data sets."

Extract from Nature Review Genetics : Literature mining for the biologist: from information retrieval to biological discovery by Peer Bork et al. 2006

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Sunday 11 March 2007

Open Text Mining Interface

OTMI Nature might not quite be in the Open Publishing business like PLoS, but they are an important player nevertheless. I hope the OTMI gets picked up by other publications. It would be nice to have a publication data standard and as one of the top two scientific journals, Nature has the clout to make this happen. Being able to mine journals and search for information is invaluable (open or otherwise), and using standard formats like OPML is an excellent idea.

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